Jerry Coyne is an evolutionary biologist and professor emeritus at the University of Chicago, widely known for his research on speciation— the evolutionary process by which populations evolve to become distinct species—, his bestselling book Why Evolution Is True, and his same-named blog. In addition to his scientific research, Coyne is a prominent atheist and advocate for science, academic freedom, and secularism. Though politically left, he is a fierce critic of the rise of ideological dogmatism, illiberalism, and identity politics within modern progressivism.
Science Before Ideology
Coyne has long argued for the primacy of evidence-based reasoning and the importance of protecting science from political and ideological interference. He has criticized both religious fundamentalism and political progressivism when either seeks to distort science. His writings have taken aim at creationism, intelligent design, and pseudoscientific trends, while also warning against ideological capture within respected science outlets like Nature and Scientific American and secular organizations such as the American Civil Liberties Union and Freedom From Religion Foundation.
Coyne believes that when science is bent to fit political or cultural agendas, it compromises scientific integrity and undermines public trust in scientific organizations and science itself.
Champion of Academic Freedom
Throughout his career, Coyne has been a consistent defender of academic freedom and intellectual openness. He argues that universities must remain places where ideas can be debated without fear of censorship, and where ideological conformity should be resisted. He warns that activism-driven academic environments risk eroding intellectual diversity and encouraging self-censorship—undermining the very mission of higher education.
While Coyne is politically left and a former anti-war activist, he is sharply critical of the contemporary left’s embrace of identity politics, ideological rigidity, and cancel culture. He argues that when the left becomes intolerant of viewpoint diversity, it mirrors the authoritarian tendencies it claims to oppose. For Coyne, politically left values must include a commitment to open debate, free expression, and the pursuit of truth—even when that truth is uncomfortable or inconvenient.
Confronting Antisemitism on the Left
As an Ashkenazi Jew, Coyne has also spoken out strongly against antisemitism, particularly when it appears under the guise of anti-Zionism in progressive movements. He warns that allowing anti-Israel rhetoric to slide into antisemitism not only harms Jews but also undermines the ethical credibility of the left.
Sex and Biology
One of Coyne’s most debated positions is his defense of biological sex as binary. While acknowledging the existence of intersex individuals, he maintains that humans are overwhelmingly biologically either male or female, based on reproductive anatomy. He says that sex is defined by gamete size, with males producing small gametes (sperms) and females producing large gametes (eggs or ova). He contends that redefining sex through the socially constructed lens of gender identity risks muddying scientific understanding, especially in medicine and biology.
Coyne differentiates between respecting gender identity in the social realm and allowing it to override biological facts. For him, scientific clarity must not be compromised by ideological and political trends.
A Clash with the Freedom From Religion Foundation
Coyne’s position on biological sex recently led to a high-profile fallout with the Freedom From Religion Foundation (FFRF)—an organization he long supported as a vocal atheist and award-winning advocate for secularism and freethought. Coyne had served for years on the FFRF's honorary board and had received the foundation’s "Emperor Has No Clothes" Award in 2011 for his contributions to science and freethought.
In late 2024, the FFRF published an article titled "What is a Woman?," which argued against defining sex strictly in biological terms. Coyne responded with a rebuttal, "Biology is Not Bigotry," defending the scientific validity of biological sex. Coyne’s article was briefly posted to the FFRF website but was swiftly removed, with the organization stating it had been published in error and did not align with their values.
Coyne publicly objected to what he saw as a retreat from scientific principles in favor of ideological appeasement and resigned from the honorary board. In solidarity, Richard Dawkins and Steven Pinker—both world-renowned scientists and longtime atheists—also resigned, citing concerns that the FFRF was adopting a new form of religious-like dogma and censorship. Dawkins warned of the organization’s capitulation to ideological pressure, while Pinker criticized its suppression of legitimate scientific debate.
In the aftermath, the FFRF dissolved its honorary board entirely. The Co-President admitted missteps in policy and communication but defended the organization’s broader mission. The controversy laid bare a growing rift within secular and scientific communities over the balance between progressive ideology and scientific objectivity.
The three articles below cover the FFRF controversy:
"Richard Dawkins, Jerry Coyne and the ‘new religion’ of gender ideology" by Professor Valery Hudson
"Losing My Nonreligion" by Jerry Coyne
"Richard Dawkins quits atheism foundation for backing transgender ‘religion’" (The Telegraph)
Much as I admire Jerry Coyne and subscribe to his daily mail, I have a big problem with his Pro Israel ideology. At the start of the latest war, I sent Coyne an article that I thought was a balanced account of the issues. He replied that if I ever wrote him again, I would be placed on a public list of known Hamas lovers" - which I am NOT! It was a threat to be publicly accused and condemned for sending a balanced article. I now skip anything he writes about Israel and stick to the science.
Thank you, David, for discussing this topic. I followed up on the references, starting with the original Kat Grant essay, Coyne's response, and the responses to the responses.
I find that Jerry Coyne is too contentious for my taste. Terry Anderson's point about being accused of being a Hamas supporter is a good example. Coyne tends to go to extremes.
The most balanced observation on this whole debate is Steven Novella's response to Coyne's critique of Novella's presentation at CSICON (see: I did follow up on the references!)
https://theness.com/neurologicablog/a-discussion-about-biological-sex/
A Discussion about Biological Sex
Published by Steven Novella
This response has the appropriate level of nuance: life is complicated.
Steven acknowledges Coyne's basic point: binary biological sex based on gametes is a starting point. But, you have to acknowledge that there is this 1% intermediate that should be addressed. And here, Coyne starts getting shrill.
This paragraph from Novella's essay is probably the best summation of the whole kerfuffle:
"Here is my actual position, as articulated (quite clearly, if the overwhelming feedback I got was any indication) in the talk. Biological sex in humans is multifactorial and complicated, pretty much like all of biology. While there are two pathways of sexual development (we are a sexually dimorphic species), humanity is not “strictly” binary because not everyone fits cleanly or unambiguously into one of two sexes. Pretty much every aspect of biological sex has variations, or “differences in sexual development”, or ambiguous features in some individuals. These are the facts, and you cannot meaningfully disagree about this. So how do skeptics disagree? Largely due to semantics (or I guess making the other side into a one-dimensional strawman)."
About a year ago, there was a similar "sex is binary" article in the Free Press. I posted a comment similar to Novella's, which led to some strong objections. As a computer professional and someone who has actually gotten published in the scientific literature on genomics ( DOI 10.1016/j.jtbi.2020.110205 ) I phrase it this way:
Sexual binary is an over-simplification. It is more appropriate to consider sex (and also gender) as a logistic function:
https://en.wikipedia.org/wiki/Logistic_function
This means that 99% of the range is either all male or all female. But there is a intermediate, non-binary, region in between where the intersex live.
When it comes to gender, there is another logistic function. Probably a little more spread out: 95% instead of 99%, maybe.
To go back to the original Kat Grant essay, obviously the conclusion is invalid: "A woman is whoever she says she is." Rachel Dolezal got into trouble with this type of claim by calling herself black.
https://en.wikipedia.org/wiki/Rachel_Dolezal
Wittgenstein pointed the problem with this claim: private language is incoherent. When you you use the term woman (or black) you are using a term that has a shared meaning.
https://en.wikipedia.org/wiki/Private_language_argument
But Coyne is definitely over the top in his objections. Not necessarily in his rebuttal, but in the following debate.